XRD2 Info for Users

SynchWeb - "Downstream Processing" section: automated phasing attempts!

Automated phasing pipelines are launched as soon as data are collected: you can have a free quick Molecular Replacement (Dimple) run if you upload proteins details in the "Proteins" section of your experiment:

Protein acronim is the bare minimum information needed upon protein creation and this is enough to associate samples to Unipucks in the "Add container" section:
Molecular Replacement (Dimple) pipeline needs a model that will be fetched from the latest PDB code or the latest custom model (pdb format) uploaded:
An example of a succesful run looks like this - maps, model and output files are available from the corresponding buttons:

The "Map / Model Viewer" button gives you access to an interactive viewer (based on Uglymol). Interface shortcuts are summarized here:

Software used at the beamline

XRD2 data collection, management and analysis systems use code from: MXCuBE3, Braggy, CCP4 Suite, Phenix Suite, SHELX Suite, PLATON, Coot, ADXV, XDS, autoPROC, Fast DP, SynchWeb, ISPyB.
Please refer to the specific software web pages for licensing issues.
Last Updated on Friday, 19 April 2024 08:46